Fig 1.
A. arguta (Actinidiaceae) genome map.
Genes shown outside the outer circle are transcribed clockwise, while those inside are transcribed counterclockwise. Genes belonging to different functional groups are color coded. The dashed area in the inner circle indicates the GC content of the chloroplast genome.
Fig 2.
Collinearity analysis in A. arguta and three other Actinidia species.
Fig 3.
Visualization of the alignment of three chloroplast genome sequences.
A. chinensis was used as the reference sequence. The vertical scale indicates the identity percentage, which ranges from 50 to 100%. The horizontal axis indicates the coordinates within the chloroplast genome. Annotated genes are displayed along the top.
Fig 4.
Analysis of repeat sequences in the A. arguta chloroplast genome.
(A) Numbers of different repeat types detected in A. arguta. (B) Distribution of repeat sequences in the chloroplast genome.
Fig 5.
Analysis of simple sequence repeats (SSRs) in the A. arguta chloroplast genome.
(A) Presence of SSRs in the LSC, SSC, and IR regions. (B) Frequency of identified SSR motifs of different repeat types.
Table 1.
SSR sequences in the Actinidia arguta chloroplast genome.
The SSR-containing coding regions are indicated in parentheses.
Fig 6.
Presence of SNPs and indels between A. arguta and other Actinidia species.
Fig 7.
Comparison of the junction positions between the SSC and IR regions.
Fig 8.
Phylogenetic tree reconstructed from the complete chloroplast genome sequences from forty-one species.
Numbers above the lines represent the ML bootstrap values.